Tuesday, November 29, 2011

Makalah ini adalah karya mahasiswa fakultas kedokteran universitas Udayana semester I (tahun 2011) dari kelompok SGD A9 sebagai student project pada block the Cell. Makalah ini membahas tentang aktin binding protein dan perannya dalam organisasi filamen aktin. Bagi mahasiswa yang sedang mempelajari blok the Cell disarankan untuk membaca makalah ini karena sangat membantu dalam memahami peran penting sitoskeleton dalam biologi sel


PROTEIN PENGIKAT AKTIN DAN PERANANNYA DALAM ORAGNISASI AKTIN FILAMEN -

Saturday, November 26, 2011

Makalah ini adalah karya mahasiswa fakultas keedokteran universitas Udayana semester I (tahun 2011) dari kelompok SGD A5 sebagai student project pada block the Cell. Makalah ini membahas tentang peran mikrotubule dalam pembelahan sel, transport intrasel dan sel lokomosi. Bagi mahasiswa yang sedang mempelajari blok the Cell disarankan untuk membaca makalah ini karena sangat membantu dalam memahami peran penting sitoskeleton dalam biologi sel


Peran Mikrotubule dalam pembelahan sel, transport intra sel dan sel lokomosi -student project -

Tuesday, November 15, 2011

Actin Binding Protein (ABP)

Actin is an essential component of the cytoskeleton and plays a crucial role in eukaryotic cells. The actin cytoskeleton functions in the generation and maintenance of cell morphology and polarity, in endocytosis and intracellular trafficking, in contractility, motility and cell division. In cells, the assembly and disassembly of actin filaments, and also their organisation into functional higher order networks, is regulated by actin-binding proteins (ABPs)

A large number of ABPs have been identified ( recently 162 proteins). No doubt more will be identified. Many of the known ABPs bind to the same loci on the surface of actin. A few bind with positive cooperativity and tend to form ternary complexes but rather more bind with negative cooperativity. In myofibrils, at least eight sarcomeric proteins bind to the thin filaments. At least 12 ABPs are membrane-associated proteins, and another nine are membrane receptors or ion transporters. Thirteen ABPs cross-link actin filaments, whereas others enable filaments to interact with other elements of the cytoskeleton. Microfilaments probably do not interact directly with microtubules and/or intermediate filaments but do so via linker proteins.

ABPs can be classified into seven groups.
  1. Monomer-binding proteins sequester G-actin and prevent its polymerization (e.g., thymosin β4, DNase I).
  2. Filament-depolymerizing proteins induce the conversion of F- to G-actin (e.g., CapZ and cofilin).
  3. Filament end-binding proteins cap the ends of the actin filament preventing the exchange of monomers at the pointed end (e.g., tropomodulin) and at the barbed end (e.g., CapZ).
  4. Filament severing proteins shorten the average length of filaments by binding to the side of F-actin and cutting it into two pieces (e.g., gelsolin).
  5. Cross-linking proteins contain at least two binding sites for F-actin, thus facilitating the formation of filament bundles, branching filaments, and three-dimensional networks (e.g., Arp2/3).
  6. Stabilizing proteins bind to the sides of actin filaments and prevent depolymerization (e.g., tropomyosin).
  7. Motor proteins that use F-actin as a track upon which to move (e.g., the myosin family of motors).


ABPs are not limited to one class, for example, gelsolin is capable of severing and capping the barbed end of actin filaments, and the Arp2/3 complex can nucleate filament formation, elongate filaments, and establish branch points in actin networks

Refferences

http://physrev.physiology.org
http://jcs.biologists.org

Tuesday, November 8, 2011

The Cytoskeleton : Intermediate Filament

Intermediate Filaments

Ultrastructural and immunocytochemical investigations reveal that a third major filamentous structure is present in eukaryotic cells. In addition to the thin (actin) and thick (myosin) filaments, cells contain a class of intermediate-sized filaments with an average diameter of 10–12 nm. Several proteins that form intermediate filaments have been isolated and localized by immunocytochemical means.

Keratins (Gr. keras, horn) are a family of approximately 20 proteins found in epithelia. They are encoded by a family of genes and have different chemical and immunological properties. This diversity of keratin is related to the various roles these proteins play in the epidermis, nails, hooves, horns, feathers, scales, and the like that provide animals with defense against abrasion and loss of water and heat.

Vimentin filaments are characteristic of cells of mesenchymal origin. (Mesenchyme is an embryonic tissue.) Vimentin is a single protein (56–58 kDa) and may copolymerize with desmin or glial fibrillary acidic protein.

Desmin (skeletin) is found in smooth muscle and in the Z disks of skeletal and cardiac muscle (53–55 kDa).

Glial filaments (glial fibrillary acidic protein) are characteristic of astrocytes but are not found in neurons, muscle, mesenchymal cells, or epithelia (51 kDa).

Neurofilaments consist of at least three high-molecular-weight polypeptides (68, 140, and 210 kDa). Intermediate filament proteins have different chemical structures and different roles in cellular function.

The Cytoskeleton : Actin Filament

Contractile activity in muscle cells results primarily from an interaction between two proteins: actin and myosin. Actin is present in muscle as a thin (5–7 nm in diameter) filament composed of globular subunits organized into a double-stranded helix. Structural and biochemical studies reveal that there are several types of actin and that this protein is present in all cells.

Within cells, microfilaments can be organized in many forms.

1. In skeletal muscle, they assume a paracrystalline array integrated with thick (16-nm) myosin filaments.
2. In most cells, actin filaments form a thin sheath just beneath the plasmalemma, called the cell cortex. These filaments appear to be associated with membrane activities such as endocytosis, exocytosis, and cell migratory activity.
3. Actin filaments are intimately associated with several cytoplasmic organelles, vesicles, and granules. The filaments are believed to play a role in moving and shifting cytoplasmic components (cytoplasmic streaming).
4. Actin filaments are associated with myosin and form a "purse-string" ring of filaments whose constriction results in the cleavage of mitotic cells.
5. In most cells, actin filaments are found scattered in what appears to be an unorganized fashion within the cytoplasm.
Although actin filaments in muscle cells are structurally stable, in nonmuscle cells they readily dissociate and reassemble. Actin filament polymerization appears to be under the direct control of minute changes in Ca2+ and cyclic AMP levels. A large number of actin-binding proteins have been demonstrated in a wide variety of cells, and much current research is focused on how these proteins regulate the state of polymerization and lateral aggregation of actin filaments. Their importance can be deduced from the fact that only about half the cell's actin is in the form of filaments.

Presumably, most actin filament-related activities depend upon the interaction of myosin with actin.



The Cytoskeleton : Microtubule

The cytoplasmic cytoskeleton is a complex network of microtubules, actin filaments (microfilaments), and intermediate filaments. These structural proteins provide for the shaping of cells and also play an important role in the movements of organelles and intracytoplasmic vesicles. The cytoskeleton also participates in the movement of entire cells.

Microtubules

Within the cytoplasmic matrix of eukaryotic cells are tubular structures known as microtubules. Microtubules are also found in cytoplasmic processes called cilia and flagella. They have an outer diameter of 24 nm, consisting of a dense wall 5 nm thick and a hollow core 14 nm wide. Microtubules are variable in length, and individual tubules can attain lengths of several micrometers.
The subunit of a microtubule is a heterodimer composed of and tubulin molecules of closely related amino acid composition, each with a molecular mass of about 50 kDa.

Under appropriate conditions (in vivo or in vitro), tubulin subunits polymerize to form microtubules. With special staining procedures, tubulin can be seen as heterodimers organized into a spiral. A total of 13 units is present in one complete turn of the spiral.

Polymerization of tubulins to form microtubules in vivo is directed by a variety of structures collectively known as microtubule-organizing centers. These structures include cilia, basal bodies, and centrosomes. Microtubule growth, via subunit polymerization, occurs more rapidly at one end of existing microtubules. This end is referred to as the plus (+) end, and the other extremity is the minus (–) end. Tubulin polymerization is under control of the concentration of Ca2+ and of the microtubule-associated proteins, or MAPs. Microtubule stability is variable; for example, microtubules of cilia are stable, whereas microtubules of the mitotic spindle have a short duration. The antimitotic alkaloid colchicine binds specifically to tubulin, and when the complex tubulin–colchicine binds to microtubules, it prevents the addition of more tubulin in the plus (+) extremity. Mitotic microtubules are broken down because the depolymerization continues, mainly at the minus (–) end, and the lost tubulin units are not replaced.
Another alkaloid that interferes with the mitotic microtubule is taxol, which accelerates the formation of microtubules but at the same time stabilizes them. All cytosolic tubulin is used in stable microtubules, and no tubulin is left for the formation of the mitotic spindle. Another alkaloid, vinblastine, acts by depolymerizing formed microtubules and, in a second step, aggregating to form paracrystalline arrays of tubulin.

Cytoplasmic microtubules are stiff structures that play a significant role in the development and maintenance of cell shape. They are usually present in a proper orientation, either to effect development of a given cellular asymmetry or to maintain it. Procedures that disrupt microtubules result in the loss of this cellular asymmetry.

Microtubules also participate in the intracellular transport of organelles and vesicles. Examples include axoplasmic transport in neurons, melanin transport in pigment cells, chromosome movements by the mitotic spindle, and vesicle movements among different cell compartments. In each of these examples, movement is related to the presence of complex microtubule networks, and such activities are suspended if microtubules are disrupted. The transport guided by microtubules is under the control of special proteins called motor proteins, which use energy to move molecules and vesicles.

Microtubules provide the basis for several complex cytoplasmic components, including centrioles, basal bodies, cilia, and flagella. Centrioles are cylindrical structures (0.15 m in diameter and 0.3–0.5 m in length) composed primarily of short, highly organized microtubules. Each centriole shows nine sets of microtubules arranged in triplets. The microtubules are so close together that adjacent microtubules of a triplet share a common wall. Close to the nucleus of nondividing cells is a centrosome made of a pair of centrioles surrounded by a granular material. In each pair, the long axes of the centrioles are at right angles to each other. Before cell division, more specifically during the S period of the interphase, each centrosome duplicates itself so that now each centrosome has two pairs of centrioles. During mitosis, the centrosomes divide in two, move to opposite poles of the cell, and become organizing centers for the microtubules of the mitotic spindle.

Cilia and flagella (singular, cilium, flagellum) are motile processes, covered by cell membrane, with a highly organized microtubule core. Ciliated cells typically possess a large number of cilia, each about 2–3 m in length. Flagellated cells have only one flagellum, with a length close to 100 m. In humans, the spermatozoa are the only cell type with a flagellum. The main function of cilia is to sweep fluid from the surface of cell sheets. Both cilia and flagella possess the same core organization.

This core consists of nine pairs of microtubules surrounding two central microtubules. This sheaf of microtubules, possessing a 9 + 2 pattern, is called an axoneme (Gr. axon, axis, + nema, thread). Each of the nine peripheral pairs shares a common wall. The microtubules in the central pair are enclosed within a central sheath. Adjacent peripheral pairs are linked to each other by protein bridges called nexins and to the central sheath by radial spokes. The microtubules of each pair are identified as A and B. Microtubule A is complete, with 13 heterodimers, whereas B has only 10 heterodimers (in a cross section). Extending from the surface of microtubule A are pairs of arms formed by the protein dynein, which has ATPase activity.

At the base of each cilium or flagellum is a basal body, essentially similar to a centriole, that controls the assembly of the axoneme.


Cell Locomotion : Amoeboid Movement

Mitotic Spindle (ANIMATION)

Flagella and Cillia (ANIMATION)

Cell Locomotion /Crawling (ANIMATION)

Actin Filament Polymerization

Microtubules (ANIMATION)

Saturday, November 5, 2011

The cytoskeleton is unique to eukaryotic cells. It is a dynamic three-dimensional structure that fills the cytoplasm. This structure acts as both muscle and skeleton, for movement and stability. The long fibers of the cytoskeleton are polymers of subunits. The primary types of fibers comprising the cytoskeleton are microfilaments, microtubules, and intermediate filaments.

Microfilaments
Microfilaments are fine, thread-like protein fibers, 3-6 nm in diameter. They are composed predominantly of a contractile protein called actin, which is the most abundant cellular protein. Microfilaments' association with the protein myosin is responsible for muscle contraction. Microfilaments can also carry out cellular movements including gliding, contraction, and cytokinesis.

Microtubules
Microtubules are cylindrical tubes, 20-25 nm in diameter. They are composed of subunits of the protein tubulin--these subunits are termed alpha and beta. Microtubules act as a scaffold to determine cell shape, and provide a set of "tracks" for cell organelles and vesicles to move on. Microtubules also form the spindle fibers for separating chromosomes during mitosis. When arranged in geometric patterns inside flagella and cilia, they are used for locomotion.

Intermediate Filaments
Intermediate filaments are about 10 nm diameter and provide tensile strength for the cell.

Examples of the cytoskeleton in epithelial cells

In the epithelial (skin) cells of the intestine, all three types of fibers are present. Microfilaments project into the villi, giving shape to the cell surface. Microtubules grow out of the centrosome to the cell periphery. Intermediate filaments connect adjacent cells through desmosomes.


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